Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
Shox2P70390 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Shox2P70390 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Shox2P70390 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.62□□□□□ -0.07
Shox2P70390 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Shox2P70390 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
Shox2P70390 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Shox2P70390 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Shox2P70390 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC14.61□□□□□ -0.07
Shox2P70390 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC14.61□□□□□ -0.07
Shox2P70390 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Gm18041-201ENSMUST00000218210 618 ntBASIC14.61□□□□□ -0.07
Shox2P70390 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Shox2P70390 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Shox2P70390 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.61□□□□□ -0.07
Shox2P70390 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Shox2P70390 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
Shox2P70390 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.6□□□□□ -0.07
Shox2P70390 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Grk6-205ENSMUST00000224653 2976 ntBASIC14.6□□□□□ -0.07
Shox2P70390 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.6□□□□□ -0.07
Shox2P70390 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.6□□□□□ -0.07
Shox2P70390 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14.6□□□□□ -0.07
Shox2P70390 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.6□□□□□ -0.07
Shox2P70390 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.6□□□□□ -0.07
Shox2P70390 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Shox2P70390 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Shox2P70390 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Shox2P70390 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
Shox2P70390 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.59□□□□□ -0.07
Shox2P70390 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Gm13312-201ENSMUST00000119631 718 ntBASIC14.59□□□□□ -0.07
Shox2P70390 Gm18622-201ENSMUST00000219361 595 ntBASIC14.59□□□□□ -0.07
Shox2P70390 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Shox2P70390 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Shox2P70390 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.59□□□□□ -0.07
Shox2P70390 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Shox2P70390 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Shox2P70390 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms