Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Gm20553-201ENSMUST00000204205 844 ntBASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Brf1Q8CFK2 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Brf1Q8CFK2 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Gm13464-201ENSMUST00000119418 935 ntBASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms