Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Gm4995-201ENSMUST00000117247 432 ntBASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 AC160980.1-201ENSMUST00000224136 970 ntBASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Sh3rf1Q69ZI1 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Gm14822-201ENSMUST00000122247 291 ntBASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Gm18622-201ENSMUST00000219361 595 ntBASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Sh3rf1Q69ZI1 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Sh3rf1Q69ZI1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Sh3rf1Q69ZI1 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.01□□□□□ -0.01
Sh3rf1Q69ZI1 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms