Protein–RNA interactions for Protein: Q66PY1

Scube3, Signal peptide, CUB and EGF-like domain-containing protein 3, mousemouse

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scube3Q66PY1 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Scube3Q66PY1 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.57■□□□□ 0.08
Scube3Q66PY1 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm20614-201ENSMUST00000177106 632 ntBASIC15.57■□□□□ 0.08
Scube3Q66PY1 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Gm14026-201ENSMUST00000120625 1789 ntBASIC15.57■□□□□ 0.08
Scube3Q66PY1 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Scube3Q66PY1 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.56■□□□□ 0.08
Scube3Q66PY1 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.56■□□□□ 0.08
Scube3Q66PY1 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.56■□□□□ 0.08
Scube3Q66PY1 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.56■□□□□ 0.08
Scube3Q66PY1 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.56■□□□□ 0.08
Scube3Q66PY1 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.55■□□□□ 0.08
Scube3Q66PY1 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.55■□□□□ 0.08
Scube3Q66PY1 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Gm6973-201ENSMUST00000117080 721 ntBASIC15.55■□□□□ 0.08
Scube3Q66PY1 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.55■□□□□ 0.08
Scube3Q66PY1 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Scube3Q66PY1 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Scube3Q66PY1 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms