Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Proscos-202ENSMUST00000178990 666 ntBASIC17.19■□□□□ 0.34
Rnf180Q3U827 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rnf180Q3U827 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC17.18■□□□□ 0.34
Rnf180Q3U827 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC17.18■□□□□ 0.34
Rnf180Q3U827 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm8805-201ENSMUST00000117848 313 ntBASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm16342-201ENSMUST00000124025 1025 ntBASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Mir5120-201ENSMUST00000175020 78 ntBASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm27682-201ENSMUST00000183930 110 ntBASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rnf180Q3U827 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Gm37230-201ENSMUST00000194491 818 ntBASIC17.16■□□□□ 0.34
Rnf180Q3U827 Gm44397-201ENSMUST00000195950 113 ntBASIC17.16■□□□□ 0.34
Rnf180Q3U827 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 CT009718.3-201ENSMUST00000221116 367 ntBASIC17.16■□□□□ 0.34
Rnf180Q3U827 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.16■□□□□ 0.34
Rnf180Q3U827 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rnf180Q3U827 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms