Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Gm13616-201ENSMUST00000120600 222 ntBASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Gm5186-201ENSMUST00000218781 920 ntBASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Ushbp1Q8R370 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Mir1895-201ENSMUST00000122615 79 ntBASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm27494-201ENSMUST00000184735 189 ntBASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm18246-201ENSMUST00000221023 728 ntBASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ushbp1Q8R370 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Gm13597-201ENSMUST00000121239 375 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 AA543401-201ENSMUST00000164248 1269 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Gm27321-201ENSMUST00000185021 205 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ushbp1Q8R370 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms