Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.69■□□□□ 0.1
Shmt1P50431 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.69■□□□□ 0.1
Shmt1P50431 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shmt1P50431 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Shmt1P50431 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
Shmt1P50431 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.68■□□□□ 0.1
Shmt1P50431 Gm43125-201ENSMUST00000201724 730 ntBASIC15.68■□□□□ 0.1
Shmt1P50431 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC15.68■□□□□ 0.1
Shmt1P50431 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Shmt1P50431 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.68■□□□□ 0.1
Shmt1P50431 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shmt1P50431 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Shmt1P50431 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Shmt1P50431 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Shmt1P50431 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Shmt1P50431 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Shmt1P50431 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
Shmt1P50431 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.67■□□□□ 0.1
Shmt1P50431 Gm27920-201ENSMUST00000183953 96 ntBASIC15.67■□□□□ 0.1
Shmt1P50431 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Shmt1P50431 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.67■□□□□ 0.1
Shmt1P50431 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Shmt1P50431 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.67■□□□□ 0.1
Shmt1P50431 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Shmt1P50431 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shmt1P50431 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Shmt1P50431 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.66■□□□□ 0.1
Shmt1P50431 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.66■□□□□ 0.1
Shmt1P50431 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.66■□□□□ 0.1
Shmt1P50431 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC15.66■□□□□ 0.1
Shmt1P50431 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Shmt1P50431 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms