Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Shroom3Q9QXN0 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Shroom3Q9QXN0 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC22.53■■□□□ 1.2
Shroom3Q9QXN0 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Shroom3Q9QXN0 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Shroom3Q9QXN0 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Shroom3Q9QXN0 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Shroom3Q9QXN0 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Shroom3Q9QXN0 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Shroom3Q9QXN0 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.52■■□□□ 1.2
Shroom3Q9QXN0 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Shroom3Q9QXN0 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Shroom3Q9QXN0 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Shroom3Q9QXN0 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Shroom3Q9QXN0 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC22.51■■□□□ 1.19
Shroom3Q9QXN0 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Shroom3Q9QXN0 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Shroom3Q9QXN0 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Shroom3Q9QXN0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Shroom3Q9QXN0 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Shroom3Q9QXN0 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Shroom3Q9QXN0 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shroom3Q9QXN0 H3f3aos-201ENSMUST00000097448 2905 ntBASIC22.48■■□□□ 1.19
Shroom3Q9QXN0 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Shroom3Q9QXN0 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Shroom3Q9QXN0 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Shroom3Q9QXN0 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC22.48■■□□□ 1.19
Shroom3Q9QXN0 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Shroom3Q9QXN0 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Gm14523-201ENSMUST00000117260 558 ntBASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Shroom3Q9QXN0 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shroom3Q9QXN0 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Shroom3Q9QXN0 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 AC164433.2-201ENSMUST00000226346 1701 ntBASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC22.43■■□□□ 1.18
Shroom3Q9QXN0 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.42■■□□□ 1.18
Shroom3Q9QXN0 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Shroom3Q9QXN0 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Shroom3Q9QXN0 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Shroom3Q9QXN0 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shroom3Q9QXN0 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Shroom3Q9QXN0 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shroom3Q9QXN0 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC22.41■■□□□ 1.18
Shroom3Q9QXN0 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shroom3Q9QXN0 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC22.4■■□□□ 1.18
Shroom3Q9QXN0 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Shroom3Q9QXN0 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Shroom3Q9QXN0 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Shroom3Q9QXN0 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC22.4■■□□□ 1.18
Shroom3Q9QXN0 Gm10420-201ENSMUST00000121713 882 ntBASIC22.39■■□□□ 1.18
Shroom3Q9QXN0 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Shroom3Q9QXN0 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Shroom3Q9QXN0 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Shroom3Q9QXN0 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Shroom3Q9QXN0 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Shroom3Q9QXN0 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Shroom3Q9QXN0 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Shroom3Q9QXN0 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shroom3Q9QXN0 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms