Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.42■□□□□ 0.86
Col6a6Q8C6K9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col6a6Q8C6K9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Col6a6Q8C6K9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.4■□□□□ 0.86
Col6a6Q8C6K9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col6a6Q8C6K9 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Col6a6Q8C6K9 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.4■□□□□ 0.86
Col6a6Q8C6K9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col6a6Q8C6K9 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Col6a6Q8C6K9 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.39■□□□□ 0.86
Col6a6Q8C6K9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col6a6Q8C6K9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.39■□□□□ 0.86
Col6a6Q8C6K9 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Col6a6Q8C6K9 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a6Q8C6K9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a6Q8C6K9 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a6Q8C6K9 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col6a6Q8C6K9 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col6a6Q8C6K9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col6a6Q8C6K9 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col6a6Q8C6K9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col6a6Q8C6K9 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col6a6Q8C6K9 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Col6a6Q8C6K9 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col6a6Q8C6K9 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col6a6Q8C6K9 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col6a6Q8C6K9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.34■□□□□ 0.85
Col6a6Q8C6K9 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col6a6Q8C6K9 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a6Q8C6K9 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Col6a6Q8C6K9 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.33■□□□□ 0.84
Col6a6Q8C6K9 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col6a6Q8C6K9 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.33■□□□□ 0.84
Col6a6Q8C6K9 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col6a6Q8C6K9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.32■□□□□ 0.84
Col6a6Q8C6K9 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a6Q8C6K9 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.32■□□□□ 0.84
Col6a6Q8C6K9 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a6Q8C6K9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a6Q8C6K9 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col6a6Q8C6K9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a6Q8C6K9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a6Q8C6K9 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col6a6Q8C6K9 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a6Q8C6K9 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.28■□□□□ 0.84
Col6a6Q8C6K9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a6Q8C6K9 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a6Q8C6K9 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a6Q8C6K9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Col6a6Q8C6K9 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a6Q8C6K9 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a6Q8C6K9 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.27■□□□□ 0.84
Col6a6Q8C6K9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col6a6Q8C6K9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Col6a6Q8C6K9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col6a6Q8C6K9 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a6Q8C6K9 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a6Q8C6K9 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a6Q8C6K9 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a6Q8C6K9 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a6Q8C6K9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a6Q8C6K9 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms