Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Npc1l1Q6T3U4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Npc1l1Q6T3U4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC27.05■■□□□ 1.92
Npc1l1Q6T3U4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
Npc1l1Q6T3U4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Npc1l1Q6T3U4 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Npc1l1Q6T3U4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC27.04■■□□□ 1.92
Npc1l1Q6T3U4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
Npc1l1Q6T3U4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Npc1l1Q6T3U4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC27.03■■□□□ 1.92
Npc1l1Q6T3U4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
Npc1l1Q6T3U4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC27.02■■□□□ 1.92
Npc1l1Q6T3U4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
Npc1l1Q6T3U4 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Npc1l1Q6T3U4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
Npc1l1Q6T3U4 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Npc1l1Q6T3U4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Npc1l1Q6T3U4 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
Npc1l1Q6T3U4 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
Npc1l1Q6T3U4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Npc1l1Q6T3U4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
Npc1l1Q6T3U4 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Npc1l1Q6T3U4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Npc1l1Q6T3U4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Npc1l1Q6T3U4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Npc1l1Q6T3U4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Npc1l1Q6T3U4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.98■■□□□ 1.91
Npc1l1Q6T3U4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Npc1l1Q6T3U4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Npc1l1Q6T3U4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Npc1l1Q6T3U4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Npc1l1Q6T3U4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Npc1l1Q6T3U4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC26.95■■□□□ 1.91
Npc1l1Q6T3U4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Npc1l1Q6T3U4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC26.94■■□□□ 1.9
Npc1l1Q6T3U4 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Npc1l1Q6T3U4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Npc1l1Q6T3U4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Npc1l1Q6T3U4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Npc1l1Q6T3U4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Npc1l1Q6T3U4 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Npc1l1Q6T3U4 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Npc1l1Q6T3U4 Gm22567-201ENSMUST00000175542 342 ntBASIC26.91■■□□□ 1.9
Npc1l1Q6T3U4 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
Npc1l1Q6T3U4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Npc1l1Q6T3U4 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Npc1l1Q6T3U4 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.9■■□□□ 1.9
Npc1l1Q6T3U4 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Npc1l1Q6T3U4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Npc1l1Q6T3U4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
Npc1l1Q6T3U4 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC26.9■■□□□ 1.9
Npc1l1Q6T3U4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
Npc1l1Q6T3U4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Npc1l1Q6T3U4 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Npc1l1Q6T3U4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Npc1l1Q6T3U4 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Npc1l1Q6T3U4 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Npc1l1Q6T3U4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Npc1l1Q6T3U4 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Npc1l1Q6T3U4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Npc1l1Q6T3U4 Gm15546-201ENSMUST00000122095 826 ntBASIC26.85■■□□□ 1.89
Npc1l1Q6T3U4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.85■■□□□ 1.89
Npc1l1Q6T3U4 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Npc1l1Q6T3U4 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Npc1l1Q6T3U4 Gm7199-201ENSMUST00000118327 1485 ntBASIC26.84■■□□□ 1.89
Npc1l1Q6T3U4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
Npc1l1Q6T3U4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
Npc1l1Q6T3U4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Npc1l1Q6T3U4 AC117769.4-201ENSMUST00000225679 685 ntBASIC26.83■■□□□ 1.89
Npc1l1Q6T3U4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Npc1l1Q6T3U4 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.88
Npc1l1Q6T3U4 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC26.83■■□□□ 1.88
Npc1l1Q6T3U4 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Npc1l1Q6T3U4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Npc1l1Q6T3U4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Npc1l1Q6T3U4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Npc1l1Q6T3U4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
Npc1l1Q6T3U4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Npc1l1Q6T3U4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Npc1l1Q6T3U4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms