Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.89■■□□□ 1.57
Smarca1Q6PGB8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Smarca1Q6PGB8 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Gm12366-201ENSMUST00000121722 873 ntBASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Gm5786-201ENSMUST00000085368 882 ntBASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Smarca1Q6PGB8 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Smarca1Q6PGB8 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Smarca1Q6PGB8 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
Smarca1Q6PGB8 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Smarca1Q6PGB8 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Smarca1Q6PGB8 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Smarca1Q6PGB8 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Smarca1Q6PGB8 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Smarca1Q6PGB8 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Smarca1Q6PGB8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.83■■□□□ 1.56
Smarca1Q6PGB8 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
Smarca1Q6PGB8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Smarca1Q6PGB8 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC24.8■■□□□ 1.56
Smarca1Q6PGB8 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Smarca1Q6PGB8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Smarca1Q6PGB8 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
Smarca1Q6PGB8 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Smarca1Q6PGB8 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Smarca1Q6PGB8 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Smarca1Q6PGB8 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Smarca1Q6PGB8 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Smarca1Q6PGB8 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Smarca1Q6PGB8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Smarca1Q6PGB8 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
Smarca1Q6PGB8 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Smarca1Q6PGB8 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Smarca1Q6PGB8 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
Smarca1Q6PGB8 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Smarca1Q6PGB8 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Smarca1Q6PGB8 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Smarca1Q6PGB8 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24.75■■□□□ 1.55
Smarca1Q6PGB8 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Smarca1Q6PGB8 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Smarca1Q6PGB8 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Smarca1Q6PGB8 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Smarca1Q6PGB8 Gm17641-201ENSMUST00000166328 2350 ntBASIC24.74■■□□□ 1.55
Smarca1Q6PGB8 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Smarca1Q6PGB8 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Smarca1Q6PGB8 Gm27502-201ENSMUST00000183495 199 ntBASIC24.73■■□□□ 1.55
Smarca1Q6PGB8 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Smarca1Q6PGB8 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Gm14523-201ENSMUST00000117260 558 ntBASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Smarca1Q6PGB8 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Smarca1Q6PGB8 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Smarca1Q6PGB8 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC24.71■■□□□ 1.55
Smarca1Q6PGB8 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.55
Smarca1Q6PGB8 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
Smarca1Q6PGB8 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Gm7332-201ENSMUST00000118351 454 ntBASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC24.69■■□□□ 1.54
Smarca1Q6PGB8 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Retrieved 100 of 76,532 protein–RNA pairs in 101.8 ms