Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ptchd3Q0EEE2 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ptchd3Q0EEE2 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.45■■□□□ 1.02
Ptchd3Q0EEE2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ptchd3Q0EEE2 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ptchd3Q0EEE2 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.43■■□□□ 1.02
Ptchd3Q0EEE2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
Ptchd3Q0EEE2 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ptchd3Q0EEE2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ptchd3Q0EEE2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ptchd3Q0EEE2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ptchd3Q0EEE2 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ptchd3Q0EEE2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ptchd3Q0EEE2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ptchd3Q0EEE2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ptchd3Q0EEE2 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21.4■■□□□ 1.02
Ptchd3Q0EEE2 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ptchd3Q0EEE2 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Ptchd3Q0EEE2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ptchd3Q0EEE2 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ptchd3Q0EEE2 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ptchd3Q0EEE2 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ptchd3Q0EEE2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ptchd3Q0EEE2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ptchd3Q0EEE2 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.39■■□□□ 1.01
Ptchd3Q0EEE2 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ptchd3Q0EEE2 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ptchd3Q0EEE2 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.38■■□□□ 1.01
Ptchd3Q0EEE2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ptchd3Q0EEE2 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Ptchd3Q0EEE2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptchd3Q0EEE2 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptchd3Q0EEE2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptchd3Q0EEE2 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptchd3Q0EEE2 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptchd3Q0EEE2 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptchd3Q0EEE2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptchd3Q0EEE2 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptchd3Q0EEE2 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ptchd3Q0EEE2 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Ptchd3Q0EEE2 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.32■■□□□ 1
Ptchd3Q0EEE2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptchd3Q0EEE2 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptchd3Q0EEE2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptchd3Q0EEE2 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptchd3Q0EEE2 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ptchd3Q0EEE2 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptchd3Q0EEE2 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.3■■□□□ 1
Ptchd3Q0EEE2 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.29■■□□□ 1
Ptchd3Q0EEE2 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ptchd3Q0EEE2 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ptchd3Q0EEE2 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ptchd3Q0EEE2 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.27■■□□□ 1
Ptchd3Q0EEE2 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.27■■□□□ 1
Ptchd3Q0EEE2 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ptchd3Q0EEE2 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.27■■□□□ 1
Ptchd3Q0EEE2 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.27■□□□□ 0.99
Ptchd3Q0EEE2 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ptchd3Q0EEE2 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ptchd3Q0EEE2 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ptchd3Q0EEE2 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ptchd3Q0EEE2 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ptchd3Q0EEE2 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ptchd3Q0EEE2 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Ptchd3Q0EEE2 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ptchd3Q0EEE2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ptchd3Q0EEE2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ptchd3Q0EEE2 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms