Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.39■■□□□ 1.34
Sox1P53783 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Sox1P53783 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Sox1P53783 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC23.39■■□□□ 1.33
Sox1P53783 Gm8495-201ENSMUST00000188740 694 ntBASIC23.39■■□□□ 1.33
Sox1P53783 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC23.39■■□□□ 1.33
Sox1P53783 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Sox1P53783 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
Sox1P53783 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Sox1P53783 AC140930.3-201ENSMUST00000222935 274 ntBASIC23.38■■□□□ 1.33
Sox1P53783 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Sox1P53783 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Sox1P53783 Gm27454-201ENSMUST00000185090 204 ntBASIC23.37■■□□□ 1.33
Sox1P53783 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.37■■□□□ 1.33
Sox1P53783 Gm45417-201ENSMUST00000209533 758 ntBASIC23.37■■□□□ 1.33
Sox1P53783 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.37■■□□□ 1.33
Sox1P53783 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Sox1P53783 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Sox1P53783 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Sox1P53783 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Sox1P53783 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Sox1P53783 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
Sox1P53783 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
Sox1P53783 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Sox1P53783 Gm22238-201ENSMUST00000175222 88 ntBASIC23.33■■□□□ 1.33
Sox1P53783 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Sox1P53783 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.33■■□□□ 1.32
Sox1P53783 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Sox1P53783 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC23.33■■□□□ 1.32
Sox1P53783 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Sox1P53783 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Sox1P53783 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
Sox1P53783 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Sox1P53783 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Sox1P53783 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Sox1P53783 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.32■■□□□ 1.32
Sox1P53783 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Sox1P53783 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Sox1P53783 Gm12821-201ENSMUST00000120022 600 ntBASIC23.3■■□□□ 1.32
Sox1P53783 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Sox1P53783 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Sox1P53783 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Sox1P53783 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Sox1P53783 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Sox1P53783 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Sox1P53783 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Sox1P53783 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.28■■□□□ 1.32
Sox1P53783 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.27■■□□□ 1.32
Sox1P53783 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Sox1P53783 Gm18284-201ENSMUST00000172604 624 ntBASIC23.27■■□□□ 1.32
Sox1P53783 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Sox1P53783 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.27■■□□□ 1.32
Sox1P53783 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Sox1P53783 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Sox1P53783 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Sox1P53783 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC23.26■■□□□ 1.31
Sox1P53783 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23.26■■□□□ 1.31
Sox1P53783 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Sox1P53783 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC23.26■■□□□ 1.31
Sox1P53783 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Sox1P53783 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Sox1P53783 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Sox1P53783 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Sox1P53783 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Sox1P53783 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Sox1P53783 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Sox1P53783 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox1P53783 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox1P53783 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
Sox1P53783 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox1P53783 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox1P53783 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.23■■□□□ 1.31
Sox1P53783 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC23.23■■□□□ 1.31
Sox1P53783 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC23.23■■□□□ 1.31
Sox1P53783 Spcs1-207ENSMUST00000228767 1008 ntBASIC23.23■■□□□ 1.31
Sox1P53783 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC23.23■■□□□ 1.31
Sox1P53783 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Sox1P53783 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox1P53783 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Sox1P53783 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC23.2■■□□□ 1.3
Sox1P53783 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC23.19■■□□□ 1.3
Sox1P53783 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Sox1P53783 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
Sox1P53783 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Sox1P53783 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Sox1P53783 Gm12922-201ENSMUST00000120626 809 ntBASIC23.18■■□□□ 1.3
Sox1P53783 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Sox1P53783 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Sox1P53783 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC23.17■■□□□ 1.3
Sox1P53783 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC23.17■■□□□ 1.3
Sox1P53783 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Sox1P53783 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms