Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Shmt1P50431 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Shmt1P50431 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Shmt1P50431 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Shmt1P50431 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Shmt1P50431 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Shmt1P50431 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.74■■□□□ 1.39
Shmt1P50431 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Shmt1P50431 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Shmt1P50431 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Shmt1P50431 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shmt1P50431 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC23.71■■□□□ 1.39
Shmt1P50431 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Shmt1P50431 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.71■■□□□ 1.39
Shmt1P50431 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shmt1P50431 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.7■■□□□ 1.38
Shmt1P50431 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Shmt1P50431 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Shmt1P50431 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.69■■□□□ 1.38
Shmt1P50431 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Shmt1P50431 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Shmt1P50431 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.66■■□□□ 1.38
Shmt1P50431 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Shmt1P50431 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Shmt1P50431 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Shmt1P50431 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.63■■□□□ 1.37
Shmt1P50431 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Shmt1P50431 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Shmt1P50431 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.63■■□□□ 1.37
Shmt1P50431 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.63■■□□□ 1.37
Shmt1P50431 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Shmt1P50431 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Shmt1P50431 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Shmt1P50431 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC23.61■■□□□ 1.37
Shmt1P50431 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Shmt1P50431 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.6■■□□□ 1.37
Shmt1P50431 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Shmt1P50431 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Shmt1P50431 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 Gm10420-201ENSMUST00000121713 882 ntBASIC23.59■■□□□ 1.37
Shmt1P50431 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Shmt1P50431 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
Shmt1P50431 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Shmt1P50431 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.57■■□□□ 1.36
Shmt1P50431 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Shmt1P50431 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Shmt1P50431 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Shmt1P50431 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Shmt1P50431 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Shmt1P50431 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Shmt1P50431 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Shmt1P50431 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Shmt1P50431 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 1035.5 ms