Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Shmt1P50431 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Shmt1P50431 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Shmt1P50431 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Shmt1P50431 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Shmt1P50431 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Shmt1P50431 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Shmt1P50431 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.74■■□□□ 1.39
Shmt1P50431 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Shmt1P50431 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shmt1P50431 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Shmt1P50431 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Shmt1P50431 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shmt1P50431 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC23.71■■□□□ 1.39
Shmt1P50431 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Shmt1P50431 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.71■■□□□ 1.39
Shmt1P50431 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shmt1P50431 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.7■■□□□ 1.38
Shmt1P50431 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Shmt1P50431 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Shmt1P50431 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.69■■□□□ 1.38
Shmt1P50431 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shmt1P50431 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Shmt1P50431 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Shmt1P50431 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shmt1P50431 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.66■■□□□ 1.38
Shmt1P50431 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Shmt1P50431 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Shmt1P50431 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Shmt1P50431 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Shmt1P50431 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Shmt1P50431 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Shmt1P50431 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.63■■□□□ 1.37
Shmt1P50431 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Shmt1P50431 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Shmt1P50431 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.63■■□□□ 1.37
Shmt1P50431 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.63■■□□□ 1.37
Shmt1P50431 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Shmt1P50431 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Shmt1P50431 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Shmt1P50431 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC23.61■■□□□ 1.37
Shmt1P50431 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Shmt1P50431 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.6■■□□□ 1.37
Shmt1P50431 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Shmt1P50431 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Shmt1P50431 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 Gm10420-201ENSMUST00000121713 882 ntBASIC23.59■■□□□ 1.37
Shmt1P50431 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Shmt1P50431 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Shmt1P50431 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Shmt1P50431 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
Shmt1P50431 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Shmt1P50431 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.57■■□□□ 1.36
Shmt1P50431 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Shmt1P50431 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Shmt1P50431 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Shmt1P50431 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Shmt1P50431 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Shmt1P50431 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Shmt1P50431 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Shmt1P50431 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.55■■□□□ 1.36
Shmt1P50431 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Shmt1P50431 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Shmt1P50431 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Shmt1P50431 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 112 ms