Protein–RNA interactions for Protein: P01849

Tcra, T-cell receptor alpha chain C region, mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TcraP01849 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TcraP01849 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TcraP01849 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TcraP01849 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TcraP01849 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TcraP01849 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TcraP01849 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TcraP01849 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TcraP01849 Tdp2-203ENSMUST00000223804 1136 ntBASIC16.19■□□□□ 0.18
TcraP01849 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TcraP01849 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TcraP01849 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TcraP01849 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TcraP01849 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC16.18■□□□□ 0.18
TcraP01849 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC16.18■□□□□ 0.18
TcraP01849 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TcraP01849 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC16.17■□□□□ 0.18
TcraP01849 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
TcraP01849 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TcraP01849 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TcraP01849 Gm43863-201ENSMUST00000203822 1192 ntBASIC16.16■□□□□ 0.18
TcraP01849 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TcraP01849 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TcraP01849 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TcraP01849 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TcraP01849 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Gm38160-201ENSMUST00000193090 2499 ntBASIC16.15■□□□□ 0.18
TcraP01849 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TcraP01849 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TcraP01849 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TcraP01849 Particl-201ENSMUST00000205370 1560 ntBASIC16.14■□□□□ 0.17
TcraP01849 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TcraP01849 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TcraP01849 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TcraP01849 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TcraP01849 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC16.14■□□□□ 0.17
TcraP01849 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TcraP01849 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC16.13■□□□□ 0.17
TcraP01849 AC157572.2-201ENSMUST00000226970 908 ntBASIC16.13■□□□□ 0.17
TcraP01849 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TcraP01849 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TcraP01849 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TcraP01849 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TcraP01849 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TcraP01849 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TcraP01849 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC16.12■□□□□ 0.17
TcraP01849 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TcraP01849 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TcraP01849 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TcraP01849 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TcraP01849 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TcraP01849 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC16.11■□□□□ 0.17
TcraP01849 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TcraP01849 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TcraP01849 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TcraP01849 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC16.1■□□□□ 0.17
TcraP01849 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TcraP01849 Gm6934-201ENSMUST00000194780 1905 ntBASIC16.1■□□□□ 0.17
TcraP01849 Gm26766-202ENSMUST00000227544 2347 ntBASIC16.1■□□□□ 0.17
TcraP01849 Gm9397-201ENSMUST00000200125 605 ntBASIC16.1■□□□□ 0.17
TcraP01849 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TcraP01849 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TcraP01849 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TcraP01849 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TcraP01849 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
TcraP01849 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TcraP01849 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TcraP01849 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC16.09■□□□□ 0.17
TcraP01849 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC16.09■□□□□ 0.17
TcraP01849 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TcraP01849 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TcraP01849 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TcraP01849 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TcraP01849 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TcraP01849 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TcraP01849 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC16.08■□□□□ 0.16
TcraP01849 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC16.08■□□□□ 0.16
TcraP01849 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TcraP01849 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TcraP01849 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TcraP01849 Gm24970-201ENSMUST00000175582 82 ntBASIC16.07■□□□□ 0.16
TcraP01849 Gm45855-201ENSMUST00000212546 880 ntBASIC16.07■□□□□ 0.16
TcraP01849 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TcraP01849 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms