Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdhgb8A0A140LI48 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Pcdhgb8A0A140LI48 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdhgb8A0A140LI48 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdhgb8A0A140LI48 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC19.92■□□□□ 0.78
Pcdhgb8A0A140LI48 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdhgb8A0A140LI48 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdhgb8A0A140LI48 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdhgb8A0A140LI48 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.89■□□□□ 0.77
Pcdhgb8A0A140LI48 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
Pcdhgb8A0A140LI48 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.88■□□□□ 0.77
Pcdhgb8A0A140LI48 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdhgb8A0A140LI48 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdhgb8A0A140LI48 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Pcdhgb8A0A140LI48 Mir6538-201ENSMUST00000183713 110 ntBASIC19.87■□□□□ 0.77
Pcdhgb8A0A140LI48 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Gm6311-201ENSMUST00000073790 878 ntBASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdhgb8A0A140LI48 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Gm37136-201ENSMUST00000194368 194 ntBASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdhgb8A0A140LI48 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdhgb8A0A140LI48 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdhgb8A0A140LI48 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Pcdhgb8A0A140LI48 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdhgb8A0A140LI48 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdhgb8A0A140LI48 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdhgb8A0A140LI48 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdhgb8A0A140LI48 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Pcdhgb8A0A140LI48 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC19.8■□□□□ 0.76
Pcdhgb8A0A140LI48 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
Pcdhgb8A0A140LI48 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms