Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gm15693-201ENSMUST00000120470 637 ntBASIC16.1■□□□□ 0.17
Trim54Q9ERP3 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Prob1-201ENSMUST00000097619 3021 ntBASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim54Q9ERP3 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm13223-201ENSMUST00000118609 747 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Klk2-ps-201ENSMUST00000205342 571 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim54Q9ERP3 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim54Q9ERP3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Celf4-206ENSMUST00000224553 1729 ntBASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim54Q9ERP3 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms