Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC24.5■■□□□ 1.51
MSH6P52701 AC112191.1-201ENST00000523689 701 ntBASIC24.5■■□□□ 1.51
MSH6P52701 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC24.5■■□□□ 1.51
MSH6P52701 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
MSH6P52701 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC24.5■■□□□ 1.51
MSH6P52701 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC24.5■■□□□ 1.51
MSH6P52701 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC24.5■■□□□ 1.51
MSH6P52701 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC24.5■■□□□ 1.51
MSH6P52701 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC24.5■■□□□ 1.51
MSH6P52701 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 AC092919.2-201ENST00000623631 1645 ntBASIC24.5■■□□□ 1.51
MSH6P52701 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
MSH6P52701 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
MSH6P52701 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 AL499627.1-201ENST00000569373 2188 ntBASIC24.49■■□□□ 1.51
MSH6P52701 BSG-215ENST00000618006 1329 ntTSL 2 BASIC24.49■■□□□ 1.51
MSH6P52701 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
MSH6P52701 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC24.49■■□□□ 1.51
MSH6P52701 FAM207CP-201ENST00000443486 507 ntBASIC24.49■■□□□ 1.51
MSH6P52701 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC24.49■■□□□ 1.51
MSH6P52701 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC24.49■■□□□ 1.51
MSH6P52701 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC24.49■■□□□ 1.51
MSH6P52701 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC24.49■■□□□ 1.51
MSH6P52701 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
MSH6P52701 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
MSH6P52701 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
MSH6P52701 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH6P52701 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC24.48■■□□□ 1.51
MSH6P52701 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
MSH6P52701 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC24.48■■□□□ 1.51
MSH6P52701 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
MSH6P52701 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH6P52701 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH6P52701 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC24.48■■□□□ 1.51
MSH6P52701 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC24.48■■□□□ 1.51
MSH6P52701 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
MSH6P52701 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC24.47■■□□□ 1.51
MSH6P52701 UGT1A2P-201ENST00000454886 866 ntBASIC24.47■■□□□ 1.51
MSH6P52701 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 GATB-205ENST00000508611 605 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 AL008721.1-201ENST00000609964 604 ntBASIC24.47■■□□□ 1.51
MSH6P52701 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH6P52701 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC24.47■■□□□ 1.51
MSH6P52701 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH6P52701 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH6P52701 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH6P52701 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
MSH6P52701 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC24.46■■□□□ 1.51
MSH6P52701 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC24.46■■□□□ 1.51
MSH6P52701 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC24.46■■□□□ 1.51
MSH6P52701 HFE2-206ENST00000634927 506 ntTSL 4 BASIC24.46■■□□□ 1.51
MSH6P52701 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 AC007952.6-201ENST00000573168 2673 ntBASIC24.46■■□□□ 1.51
MSH6P52701 AC003957.1-201ENST00000625108 2673 ntBASIC24.46■■□□□ 1.51
MSH6P52701 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
MSH6P52701 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH6P52701 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH6P52701 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
MSH6P52701 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
MSH6P52701 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms