Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col5a1O88207 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Col5a1O88207 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col5a1O88207 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col5a1O88207 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Col5a1O88207 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC13.26□□□□□ -0.29
Col5a1O88207 Gm14780-201ENSMUST00000118387 2737 ntBASIC13.26□□□□□ -0.29
Col5a1O88207 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC13.26□□□□□ -0.29
Col5a1O88207 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.26□□□□□ -0.29
Col5a1O88207 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.26□□□□□ -0.29
Col5a1O88207 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.26□□□□□ -0.29
Col5a1O88207 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.26□□□□□ -0.29
Col5a1O88207 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Col5a1O88207 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col5a1O88207 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col5a1O88207 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.25□□□□□ -0.29
Col5a1O88207 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.25□□□□□ -0.29
Col5a1O88207 AA619741-201ENSMUST00000195095 646 ntBASIC13.25□□□□□ -0.29
Col5a1O88207 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col5a1O88207 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Dapk1-207ENSMUST00000226059 5009 ntBASIC13.25□□□□□ -0.29
Col5a1O88207 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC13.25□□□□□ -0.29
Col5a1O88207 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC13.25□□□□□ -0.29
Col5a1O88207 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Gm15806-201ENSMUST00000120696 955 ntBASIC13.25□□□□□ -0.29
Col5a1O88207 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC13.25□□□□□ -0.29
Col5a1O88207 Gm21854-201ENSMUST00000179901 471 ntBASIC13.25□□□□□ -0.29
Col5a1O88207 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC13.25□□□□□ -0.29
Col5a1O88207 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC13.25□□□□□ -0.29
Col5a1O88207 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col5a1O88207 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col5a1O88207 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col5a1O88207 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Col5a1O88207 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC13.24□□□□□ -0.29
Col5a1O88207 Gm9229-201ENSMUST00000222777 126 ntBASIC13.24□□□□□ -0.29
Col5a1O88207 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
Col5a1O88207 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC13.24□□□□□ -0.29
Col5a1O88207 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col5a1O88207 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col5a1O88207 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col5a1O88207 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC13.23□□□□□ -0.29
Col5a1O88207 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col5a1O88207 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms