Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.71■□□□□ 0.27
Ushbp1Q8R370 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Ushbp1Q8R370 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ushbp1Q8R370 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Ushbp1Q8R370 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Ushbp1Q8R370 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Mir6956-201ENSMUST00000183598 62 ntBASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Gm43767-201ENSMUST00000198933 381 ntBASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Ushbp1Q8R370 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ushbp1Q8R370 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Gm10313-201ENSMUST00000095320 1002 ntBASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ushbp1Q8R370 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Gm37171-201ENSMUST00000192636 1185 ntBASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms