Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf180Q3U827 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm14381-201ENSMUST00000122105 414 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm25668-201ENSMUST00000157700 129 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm21470-201ENSMUST00000187680 696 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm6334-201ENSMUST00000207083 228 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC17.3■□□□□ 0.36
Rnf180Q3U827 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf180Q3U827 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gm11793-201ENSMUST00000120433 981 ntBASIC17.29■□□□□ 0.36
Rnf180Q3U827 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Olfr284-202ENSMUST00000206647 966 ntBASIC17.29■□□□□ 0.36
Rnf180Q3U827 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gm10339-203ENSMUST00000225409 1671 ntBASIC17.29■□□□□ 0.36
Rnf180Q3U827 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf180Q3U827 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gm12201-201ENSMUST00000120657 1234 ntBASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gm4819-201ENSMUST00000182170 1009 ntBASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gm9445-201ENSMUST00000207454 1285 ntBASIC17.28■□□□□ 0.36
Rnf180Q3U827 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Abhd11os-203ENSMUST00000222613 363 ntBASIC17.28■□□□□ 0.36
Rnf180Q3U827 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Rnf180Q3U827 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.28■□□□□ 0.36
Rnf180Q3U827 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gm7895-201ENSMUST00000187459 1173 ntBASIC17.27■□□□□ 0.36
Rnf180Q3U827 Gm19078-201ENSMUST00000206311 727 ntBASIC17.27■□□□□ 0.36
Rnf180Q3U827 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC17.27■□□□□ 0.36
Rnf180Q3U827 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms