Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Gm21854-201ENSMUST00000179901 471 ntBASIC16.75■□□□□ 0.27
Col2a1P28481 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.75■□□□□ 0.27
Col2a1P28481 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col2a1P28481 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Col2a1P28481 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Gtpbp10-211ENSMUST00000198799 648 ntBASIC16.74■□□□□ 0.27
Col2a1P28481 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Col2a1P28481 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.74■□□□□ 0.27
Col2a1P28481 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.74■□□□□ 0.27
Col2a1P28481 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col2a1P28481 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.74■□□□□ 0.27
Col2a1P28481 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col2a1P28481 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC16.74■□□□□ 0.27
Col2a1P28481 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col2a1P28481 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col2a1P28481 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col2a1P28481 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col2a1P28481 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.73■□□□□ 0.27
Col2a1P28481 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Col2a1P28481 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.73■□□□□ 0.27
Col2a1P28481 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.73■□□□□ 0.27
Col2a1P28481 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.73■□□□□ 0.27
Col2a1P28481 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.73■□□□□ 0.27
Col2a1P28481 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.73■□□□□ 0.27
Col2a1P28481 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col2a1P28481 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col2a1P28481 Syt7-205ENSMUST00000224135 1557 ntBASIC16.72■□□□□ 0.27
Col2a1P28481 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC16.72■□□□□ 0.27
Col2a1P28481 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col2a1P28481 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Col2a1P28481 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Col2a1P28481 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC16.72■□□□□ 0.27
Col2a1P28481 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC16.72■□□□□ 0.27
Col2a1P28481 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Gm6916-202ENSMUST00000205523 195 ntBASIC16.72■□□□□ 0.27
Col2a1P28481 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 AC140375.2-201ENSMUST00000225283 584 ntBASIC16.72■□□□□ 0.27
Col2a1P28481 Gm20445-201ENSMUST00000061905 565 ntBASIC16.72■□□□□ 0.27
Col2a1P28481 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col2a1P28481 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col2a1P28481 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col2a1P28481 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms