Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 AC106886.4-201ENST00000623557 2502 ntBASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SMARCAL1Q9NZC9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 KRT17P2-201ENST00000300992 1314 ntBASIC18.83■□□□□ 0.61
SMARCAL1Q9NZC9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SMARCAL1Q9NZC9 BCL2-203ENST00000589955 5011 ntBASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 DUTP2-201ENST00000519164 463 ntBASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 MIR4497-201ENST00000583208 89 ntBASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 AL023803.3-201ENST00000615559 522 ntBASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCAL1Q9NZC9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 AC104390.1-201ENST00000555663 520 ntBASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms