Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm44335-201ENSMUST00000196879 141 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm44297-201ENSMUST00000198304 141 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm44346-201ENSMUST00000198851 141 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 AC166341.4-201ENSMUST00000220625 123 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.61■□□□□ 0.41
Trim56Q80VI1 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim56Q80VI1 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Gm18889-201ENSMUST00000174284 929 ntBASIC17.6■□□□□ 0.41
Trim56Q80VI1 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim56Q80VI1 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Nudt18-203ENSMUST00000228768 1578 ntBASIC17.59■□□□□ 0.41
Trim56Q80VI1 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.59■□□□□ 0.41
Trim56Q80VI1 Gm18057-201ENSMUST00000208220 503 ntBASIC17.59■□□□□ 0.41
Trim56Q80VI1 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim56Q80VI1 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim56Q80VI1 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim56Q80VI1 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim56Q80VI1 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim56Q80VI1 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms