Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.27■□□□□ 0.36
Traf1P39428 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Traf1P39428 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Traf1P39428 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Traf1P39428 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Traf1P39428 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Traf1P39428 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Traf1P39428 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.27■□□□□ 0.35
Traf1P39428 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.27■□□□□ 0.35
Traf1P39428 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Traf1P39428 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Traf1P39428 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Traf1P39428 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Gm13616-201ENSMUST00000120600 222 ntBASIC17.26■□□□□ 0.35
Traf1P39428 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC17.26■□□□□ 0.35
Traf1P39428 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Gm10576-201ENSMUST00000191927 825 ntBASIC17.26■□□□□ 0.35
Traf1P39428 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.26■□□□□ 0.35
Traf1P39428 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.26■□□□□ 0.35
Traf1P39428 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.26■□□□□ 0.35
Traf1P39428 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.26■□□□□ 0.35
Traf1P39428 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Traf1P39428 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Traf1P39428 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Traf1P39428 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Traf1P39428 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Traf1P39428 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Traf1P39428 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Traf1P39428 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.25■□□□□ 0.35
Traf1P39428 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Traf1P39428 Mir6956-201ENSMUST00000183598 62 ntBASIC17.25■□□□□ 0.35
Traf1P39428 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.25■□□□□ 0.35
Traf1P39428 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.25■□□□□ 0.35
Traf1P39428 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Traf1P39428 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Traf1P39428 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Traf1P39428 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Traf1P39428 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Traf1P39428 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Gm22065-201ENSMUST00000103753 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm22066-201ENSMUST00000103761 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24932-201ENSMUST00000103763 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24115-201ENSMUST00000103799 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm22190-201ENSMUST00000103827 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm22191-201ENSMUST00000103831 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24721-201ENSMUST00000103849 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm28018-201ENSMUST00000103869 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm26399-201ENSMUST00000103937 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm6973-201ENSMUST00000117080 721 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Gm25349-201ENSMUST00000177728 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm23616-201ENSMUST00000177797 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm25871-201ENSMUST00000177816 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24752-201ENSMUST00000178240 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24496-201ENSMUST00000178287 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm25649-201ENSMUST00000178476 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm25548-201ENSMUST00000178681 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm23147-201ENSMUST00000178841 110 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms