Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm18737-201ENSMUST00000173594 937 ntBASIC14.64□□□□□ -0.07
Chd3B1AR17 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC14.64□□□□□ -0.07
Chd3B1AR17 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Chd3B1AR17 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.64□□□□□ -0.07
Chd3B1AR17 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Chd3B1AR17 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Gm7774-201ENSMUST00000200064 533 ntBASIC14.63□□□□□ -0.07
Chd3B1AR17 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Chd3B1AR17 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Chd3B1AR17 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Chd3B1AR17 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC14.63□□□□□ -0.07
Chd3B1AR17 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Chd3B1AR17 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Gm13223-201ENSMUST00000118609 747 ntBASIC14.62□□□□□ -0.07
Chd3B1AR17 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.62□□□□□ -0.07
Chd3B1AR17 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.62□□□□□ -0.07
Chd3B1AR17 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Chd3B1AR17 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Gm17837-201ENSMUST00000186435 985 ntBASIC14.61□□□□□ -0.07
Chd3B1AR17 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.61□□□□□ -0.07
Chd3B1AR17 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms