Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.77■□□□□ 0.44
Ube3bQ9ES34 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.77■□□□□ 0.44
Ube3bQ9ES34 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Ube3bQ9ES34 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Ube3bQ9ES34 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ube3bQ9ES34 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.77■□□□□ 0.43
Ube3bQ9ES34 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Gm38225-201ENSMUST00000194001 393 ntBASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ube3bQ9ES34 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Mir449b-201ENSMUST00000104833 80 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Gm5479-201ENSMUST00000160578 435 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Ube3bQ9ES34 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube3bQ9ES34 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Gm13616-201ENSMUST00000120600 222 ntBASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ube3bQ9ES34 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms