Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim47Q8C0E3 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim47Q8C0E3 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim47Q8C0E3 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.58■□□□□ 0.25
Trim47Q8C0E3 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.58■□□□□ 0.25
Trim47Q8C0E3 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm8597-201ENSMUST00000191525 1109 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm44335-201ENSMUST00000196879 141 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm44297-201ENSMUST00000198304 141 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm44346-201ENSMUST00000198851 141 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim47Q8C0E3 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Gm15483-201ENSMUST00000120338 456 ntBASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
Trim47Q8C0E3 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim47Q8C0E3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim47Q8C0E3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms