Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc9Q8VC31 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc9Q8VC31 Gm14780-201ENSMUST00000118387 2737 ntBASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc9Q8VC31 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Gm20632-201ENSMUST00000176760 2427 ntBASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Ccdc9Q8VC31 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Gm37025-201ENSMUST00000195159 829 ntBASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Timm23-208ENSMUST00000226683 750 ntBASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Gm30238-201ENSMUST00000195528 2603 ntBASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc9Q8VC31 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms