Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm9727-201ENSMUST00000161387 555 ntBASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm27525-201ENSMUST00000184465 107 ntBASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm7229-201ENSMUST00000214719 1007 ntBASIC18.15■□□□□ 0.5
Brf1Q8CFK2 CT010506.4-201ENSMUST00000225457 351 ntBASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 AC131586.3-201ENSMUST00000228355 1367 ntBASIC18.15■□□□□ 0.5
Brf1Q8CFK2 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Brf1Q8CFK2 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Brf1Q8CFK2 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Gm12260-201ENSMUST00000122447 411 ntBASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Brf1Q8CFK2 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Brf1Q8CFK2 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Gm17968-201ENSMUST00000194902 784 ntBASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Gm6443-201ENSMUST00000203599 874 ntBASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Gm10313-201ENSMUST00000095320 1002 ntBASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Mxra8os-201ENSMUST00000097740 687 ntBASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms