Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.19■□□□□ 0.82
TPM4P67936 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM4P67936 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TPM4P67936 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 AD000864.1-201ENST00000624076 2295 ntBASIC20.18■□□□□ 0.82
TPM4P67936 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 ESRRAP1-201ENST00000400596 1257 ntBASIC20.18■□□□□ 0.82
TPM4P67936 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.18■□□□□ 0.82
TPM4P67936 AF186192.3-201ENST00000583427 947 ntBASIC20.18■□□□□ 0.82
TPM4P67936 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.18■□□□□ 0.82
TPM4P67936 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM4P67936 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TPM4P67936 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
TPM4P67936 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TPM4P67936 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.17■□□□□ 0.82
TPM4P67936 AC080080.1-201ENST00000625121 2420 ntBASIC20.17■□□□□ 0.82
TPM4P67936 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 AC036111.1-201ENST00000533973 1582 ntBASIC20.17■□□□□ 0.82
TPM4P67936 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TPM4P67936 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TPM4P67936 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM4P67936 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM4P67936 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 AC096733.2-201ENST00000609937 1394 ntBASIC20.16■□□□□ 0.82
TPM4P67936 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.16■□□□□ 0.82
TPM4P67936 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.16■□□□□ 0.82
TPM4P67936 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TPM4P67936 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.16■□□□□ 0.82
TPM4P67936 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TPM4P67936 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.15■□□□□ 0.82
TPM4P67936 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.15■□□□□ 0.82
TPM4P67936 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TPM4P67936 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms