Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Rfx1P48377 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.04■□□□□ 0.48
Rfx1P48377 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx1P48377 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Rfx1P48377 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC18.03■□□□□ 0.48
Rfx1P48377 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Rfx1P48377 Mir3081-201ENSMUST00000175305 84 ntBASIC18.03■□□□□ 0.48
Rfx1P48377 Gm44454-201ENSMUST00000198541 138 ntBASIC18.03■□□□□ 0.48
Rfx1P48377 Gm9172-201ENSMUST00000212092 954 ntBASIC18.03■□□□□ 0.48
Rfx1P48377 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC18.03■□□□□ 0.48
Rfx1P48377 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Rfx1P48377 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx1P48377 Gm43195-201ENSMUST00000200614 2332 ntBASIC18.03■□□□□ 0.48
Rfx1P48377 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx1P48377 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.02■□□□□ 0.48
Rfx1P48377 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.02■□□□□ 0.48
Rfx1P48377 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Rfx1P48377 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC18.02■□□□□ 0.48
Rfx1P48377 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.02■□□□□ 0.48
Rfx1P48377 Gm18622-201ENSMUST00000219361 595 ntBASIC18.02■□□□□ 0.48
Rfx1P48377 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.02■□□□□ 0.48
Rfx1P48377 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Rfx1P48377 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx1P48377 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Rfx1P48377 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Rfx1P48377 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rfx1P48377 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Rfx1P48377 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Rfx1P48377 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rfx1P48377 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx1P48377 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms