Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 AC125634.1-201ENST00000438758 1403 ntBASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 AC018445.3-201ENST00000624177 1945 ntBASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 AC008608.2-201ENST00000606089 416 ntBASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDDC3Q8N4P3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 AC073648.2-201ENST00000510116 352 ntBASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 BCL2-203ENST00000589955 5011 ntBASIC18.03■□□□□ 0.48
HDDC3Q8N4P3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 INTS4P1-201ENST00000438455 1935 ntBASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 AP000974.1-201ENST00000623909 2387 ntBASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDDC3Q8N4P3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDDC3Q8N4P3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDDC3Q8N4P3 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.02■□□□□ 0.47
HDDC3Q8N4P3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms