Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Upf3bQ3ULL6 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Gm6443-201ENSMUST00000203599 874 ntBASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3bQ3ULL6 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3bQ3ULL6 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms