Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Gm6257-201ENSMUST00000163864 910 ntBASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Gm27867-201ENSMUST00000184778 125 ntBASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim39Q9ESN2 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Ank2-226ENSMUST00000189368 339 ntBASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Gm18669-201ENSMUST00000216049 778 ntBASIC14.19□□□□□ -0.14
Trim39Q9ESN2 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim39Q9ESN2 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.18□□□□□ -0.14
Trim39Q9ESN2 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim39Q9ESN2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Gm12895-201ENSMUST00000122214 226 ntBASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim39Q9ESN2 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms