Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm4459-201ENSMUST00000118750 468 ntBASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm7506-201ENSMUST00000207758 815 ntBASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp2bQ8BJF9 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Chmp2bQ8BJF9 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Gm13836-201ENSMUST00000121159 501 ntBASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp2bQ8BJF9 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp2bQ8BJF9 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp2bQ8BJF9 Gm8344-201ENSMUST00000119813 856 ntBASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms