Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.9■□□□□ 0.14
LMX1BO60663 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LMX1BO60663 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 FLJ13224-201ENST00000313737 1514 ntBASIC15.9■□□□□ 0.14
LMX1BO60663 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.9■□□□□ 0.14
LMX1BO60663 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.9■□□□□ 0.14
LMX1BO60663 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.9■□□□□ 0.14
LMX1BO60663 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.9■□□□□ 0.14
LMX1BO60663 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.9■□□□□ 0.14
LMX1BO60663 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.9■□□□□ 0.14
LMX1BO60663 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
LMX1BO60663 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LMX1BO60663 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LMX1BO60663 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LMX1BO60663 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.9■□□□□ 0.14
LMX1BO60663 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1BO60663 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.14
LMX1BO60663 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 AL671277.2-201ENST00000458060 996 ntBASIC15.89■□□□□ 0.13
LMX1BO60663 AL359075.1-203ENST00000462729 1002 ntBASIC15.89■□□□□ 0.13
LMX1BO60663 CA15P1-201ENST00000481698 905 ntBASIC15.89■□□□□ 0.13
LMX1BO60663 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.89■□□□□ 0.13
LMX1BO60663 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.89■□□□□ 0.13
LMX1BO60663 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LMX1BO60663 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.89■□□□□ 0.13
LMX1BO60663 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LMX1BO60663 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1BO60663 AL163051.1-201ENST00000569214 1512 ntBASIC15.89■□□□□ 0.13
LMX1BO60663 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1BO60663 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1BO60663 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1BO60663 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LMX1BO60663 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1BO60663 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1BO60663 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.88■□□□□ 0.13
LMX1BO60663 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1BO60663 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1BO60663 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
LMX1BO60663 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms