Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.66■□□□□ 0.26
Prom1O54990 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Prom1O54990 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Prom1O54990 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.66■□□□□ 0.26
Prom1O54990 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Prom1O54990 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC16.65■□□□□ 0.26
Prom1O54990 Gm27437-201ENSMUST00000183429 107 ntBASIC16.65■□□□□ 0.26
Prom1O54990 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC16.65■□□□□ 0.26
Prom1O54990 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.65■□□□□ 0.26
Prom1O54990 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.65■□□□□ 0.26
Prom1O54990 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Prom1O54990 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Prom1O54990 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.64■□□□□ 0.25
Prom1O54990 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.64■□□□□ 0.25
Prom1O54990 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Prom1O54990 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Prom1O54990 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Gm27306-201ENSMUST00000183970 107 ntBASIC16.64■□□□□ 0.25
Prom1O54990 Gm18766-201ENSMUST00000189811 808 ntBASIC16.64■□□□□ 0.25
Prom1O54990 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
Prom1O54990 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.64■□□□□ 0.25
Prom1O54990 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prom1O54990 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
Prom1O54990 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
Prom1O54990 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC16.63■□□□□ 0.25
Prom1O54990 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Prom1O54990 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC16.63■□□□□ 0.25
Prom1O54990 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.63■□□□□ 0.25
Prom1O54990 Ighv8-7-201ENSMUST00000194349 297 ntBASIC16.63■□□□□ 0.25
Prom1O54990 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.63■□□□□ 0.25
Prom1O54990 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Prom1O54990 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Prom1O54990 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Prom1O54990 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.63■□□□□ 0.25
Prom1O54990 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.63■□□□□ 0.25
Prom1O54990 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.63■□□□□ 0.25
Prom1O54990 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Prom1O54990 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prom1O54990 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC16.62■□□□□ 0.25
Prom1O54990 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.62■□□□□ 0.25
Prom1O54990 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.62■□□□□ 0.25
Prom1O54990 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.62■□□□□ 0.25
Prom1O54990 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Prom1O54990 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC16.62■□□□□ 0.25
Prom1O54990 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prom1O54990 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms