Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trub1Q8C0D0 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Gm7787-201ENSMUST00000216858 688 ntBASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.65■□□□□ 0.1
Trub1Q8C0D0 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Gm4899-201ENSMUST00000178708 719 ntBASIC15.64■□□□□ 0.09
Trub1Q8C0D0 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Efs-202ENSMUST00000227037 2540 ntBASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trub1Q8C0D0 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.63■□□□□ 0.09
Trub1Q8C0D0 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms