Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Gm42466-201ENSMUST00000202099 1301 ntBASIC19.61■□□□□ 0.73
Trim28Q62318 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Trim28Q62318 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC19.61■□□□□ 0.73
Trim28Q62318 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC19.61■□□□□ 0.73
Trim28Q62318 Gm27618-201ENSMUST00000183671 60 ntBASIC19.61■□□□□ 0.73
Trim28Q62318 AC158529.1-201ENSMUST00000223618 239 ntBASIC19.61■□□□□ 0.73
Trim28Q62318 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim28Q62318 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim28Q62318 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Trim28Q62318 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Trav13-3-201ENSMUST00000117226 336 ntBASIC19.6■□□□□ 0.73
Trim28Q62318 Gm18766-201ENSMUST00000189811 808 ntBASIC19.6■□□□□ 0.73
Trim28Q62318 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC19.6■□□□□ 0.73
Trim28Q62318 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Trim28Q62318 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim28Q62318 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Trim28Q62318 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trim28Q62318 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC19.59■□□□□ 0.73
Trim28Q62318 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Gm6415-201ENSMUST00000118488 348 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 Gm13223-201ENSMUST00000118609 747 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 Gm27430-201ENSMUST00000184585 107 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 Gm44333-201ENSMUST00000197168 107 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 Gm18049-201ENSMUST00000208909 581 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 AC126408.1-201ENSMUST00000225184 523 ntBASIC19.59■□□□□ 0.73
Trim28Q62318 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim28Q62318 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Trim28Q62318 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim28Q62318 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC19.58■□□□□ 0.73
Trim28Q62318 Gm4691-201ENSMUST00000182339 1000 ntBASIC19.58■□□□□ 0.72
Trim28Q62318 Gm2451-201ENSMUST00000199447 999 ntBASIC19.58■□□□□ 0.72
Trim28Q62318 Gm10290-201ENSMUST00000200451 999 ntBASIC19.58■□□□□ 0.72
Trim28Q62318 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC19.58■□□□□ 0.72
Trim28Q62318 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Trim28Q62318 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Trim28Q62318 Gm21009-201ENSMUST00000197169 1669 ntBASIC19.58■□□□□ 0.72
Trim28Q62318 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC19.58■□□□□ 0.72
Trim28Q62318 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim28Q62318 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Trim28Q62318 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms