Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Gm37722-201ENSMUST00000193757 208 ntBASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim40Q3UWA4 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm11355-201ENSMUST00000121120 306 ntBASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm21559-201ENSMUST00000220638 855 ntBASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm8587-201ENSMUST00000076538 843 ntBASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trim40Q3UWA4 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Gm22697-201ENSMUST00000175194 63 ntBASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Gm18101-201ENSMUST00000215769 548 ntBASIC14.25□□□□□ -0.13
Trim40Q3UWA4 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim40Q3UWA4 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms