Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Cpsf1Q9EPU4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Cpsf1Q9EPU4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
Cpsf1Q9EPU4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Cpsf1Q9EPU4 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Cpsf1Q9EPU4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Gm44428-201ENSMUST00000204474 874 ntBASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Cpsf1Q9EPU4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC31.8■■■□□ 2.68
Cpsf1Q9EPU4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC31.76■■■□□ 2.68
Cpsf1Q9EPU4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
Cpsf1Q9EPU4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC31.76■■■□□ 2.67
Cpsf1Q9EPU4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
Cpsf1Q9EPU4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
Cpsf1Q9EPU4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC31.73■■■□□ 2.67
Cpsf1Q9EPU4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cpsf1Q9EPU4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cpsf1Q9EPU4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Cpsf1Q9EPU4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Cpsf1Q9EPU4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Cpsf1Q9EPU4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC31.68■■■□□ 2.66
Cpsf1Q9EPU4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Gm10420-201ENSMUST00000121713 882 ntBASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 Gm42699-201ENSMUST00000198104 1657 ntBASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Cpsf1Q9EPU4 Gm7199-201ENSMUST00000118327 1485 ntBASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Cpsf1Q9EPU4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Cpsf1Q9EPU4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Gm5067-201ENSMUST00000170449 1009 ntBASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms