Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh4Q99MT2 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Msh4Q99MT2 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.74■■□□□ 1.07
Msh4Q99MT2 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Msh4Q99MT2 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Msh4Q99MT2 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh4Q99MT2 Scarna2-201ENSMUST00000157560 414 ntBASIC21.73■■□□□ 1.07
Msh4Q99MT2 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh4Q99MT2 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh4Q99MT2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Msh4Q99MT2 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Msh4Q99MT2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Msh4Q99MT2 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
Msh4Q99MT2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Msh4Q99MT2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Msh4Q99MT2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Msh4Q99MT2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Msh4Q99MT2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.7■■□□□ 1.06
Msh4Q99MT2 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Msh4Q99MT2 Gm9806-201ENSMUST00000051080 552 ntBASIC21.7■■□□□ 1.06
Msh4Q99MT2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Msh4Q99MT2 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Msh4Q99MT2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msh4Q99MT2 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msh4Q99MT2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Msh4Q99MT2 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Msh4Q99MT2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msh4Q99MT2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msh4Q99MT2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Msh4Q99MT2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.68■■□□□ 1.06
Msh4Q99MT2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msh4Q99MT2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msh4Q99MT2 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msh4Q99MT2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Msh4Q99MT2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Msh4Q99MT2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.67■■□□□ 1.06
Msh4Q99MT2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Gm9812-201ENSMUST00000061934 968 ntBASIC21.67■■□□□ 1.06
Msh4Q99MT2 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msh4Q99MT2 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Gm11687-201ENSMUST00000118911 886 ntBASIC21.66■■□□□ 1.06
Msh4Q99MT2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.66■■□□□ 1.06
Msh4Q99MT2 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Msh4Q99MT2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.65■■□□□ 1.06
Msh4Q99MT2 Gm16437-201ENSMUST00000025669 507 ntBASIC21.65■■□□□ 1.06
Msh4Q99MT2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
Msh4Q99MT2 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
Msh4Q99MT2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.64■■□□□ 1.06
Msh4Q99MT2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Msh4Q99MT2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Msh4Q99MT2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Msh4Q99MT2 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Msh4Q99MT2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Msh4Q99MT2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Msh4Q99MT2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Msh4Q99MT2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Msh4Q99MT2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msh4Q99MT2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh4Q99MT2 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh4Q99MT2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh4Q99MT2 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.59■■□□□ 1.05
Msh4Q99MT2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Msh4Q99MT2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Msh4Q99MT2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Msh4Q99MT2 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.57■■□□□ 1.04
Msh4Q99MT2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh4Q99MT2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh4Q99MT2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh4Q99MT2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh4Q99MT2 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh4Q99MT2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh4Q99MT2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh4Q99MT2 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.55■■□□□ 1.04
Msh4Q99MT2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms