Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scrt1Q99M85 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scrt1Q99M85 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scrt1Q99M85 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scrt1Q99M85 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.71■□□□□ 0.75
Scrt1Q99M85 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Scrt1Q99M85 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scrt1Q99M85 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Scrt1Q99M85 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scrt1Q99M85 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scrt1Q99M85 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scrt1Q99M85 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scrt1Q99M85 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scrt1Q99M85 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scrt1Q99M85 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scrt1Q99M85 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scrt1Q99M85 Gm15820-201ENSMUST00000201566 728 ntBASIC19.66■□□□□ 0.74
Scrt1Q99M85 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Terc-201ENSMUST00000082862 423 ntBASIC19.66■□□□□ 0.74
Scrt1Q99M85 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scrt1Q99M85 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scrt1Q99M85 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scrt1Q99M85 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Scrt1Q99M85 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scrt1Q99M85 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.64■□□□□ 0.73
Scrt1Q99M85 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scrt1Q99M85 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scrt1Q99M85 Gm13238-201ENSMUST00000117655 780 ntBASIC19.63■□□□□ 0.73
Scrt1Q99M85 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.63■□□□□ 0.73
Scrt1Q99M85 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Scrt1Q99M85 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scrt1Q99M85 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Rps24-207ENSMUST00000224568 714 ntBASIC19.62■□□□□ 0.73
Scrt1Q99M85 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scrt1Q99M85 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Scrt1Q99M85 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scrt1Q99M85 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scrt1Q99M85 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scrt1Q99M85 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scrt1Q99M85 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Scrt1Q99M85 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scrt1Q99M85 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scrt1Q99M85 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Scrt1Q99M85 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Scrt1Q99M85 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.59■□□□□ 0.73
Scrt1Q99M85 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scrt1Q99M85 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scrt1Q99M85 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Scrt1Q99M85 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scrt1Q99M85 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scrt1Q99M85 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scrt1Q99M85 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scrt1Q99M85 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.57■□□□□ 0.72
Scrt1Q99M85 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.57■□□□□ 0.72
Scrt1Q99M85 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scrt1Q99M85 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scrt1Q99M85 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scrt1Q99M85 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scrt1Q99M85 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scrt1Q99M85 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scrt1Q99M85 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.55■□□□□ 0.72
Scrt1Q99M85 Gm14117-201ENSMUST00000122417 843 ntBASIC19.55■□□□□ 0.72
Scrt1Q99M85 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.55■□□□□ 0.72
Scrt1Q99M85 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Scrt1Q99M85 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scrt1Q99M85 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms