Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ushbp1Q8R370 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ushbp1Q8R370 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ushbp1Q8R370 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ushbp1Q8R370 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ushbp1Q8R370 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.23■■□□□ 1.63
Ushbp1Q8R370 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ushbp1Q8R370 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ushbp1Q8R370 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Ushbp1Q8R370 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ushbp1Q8R370 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Ushbp1Q8R370 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ushbp1Q8R370 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ushbp1Q8R370 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC25.21■■□□□ 1.63
Ushbp1Q8R370 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.2■■□□□ 1.62
Ushbp1Q8R370 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
Ushbp1Q8R370 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Ushbp1Q8R370 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ushbp1Q8R370 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Ushbp1Q8R370 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
Ushbp1Q8R370 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.18■■□□□ 1.62
Ushbp1Q8R370 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ushbp1Q8R370 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ushbp1Q8R370 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ushbp1Q8R370 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ushbp1Q8R370 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ushbp1Q8R370 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ushbp1Q8R370 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC25.17■■□□□ 1.62
Ushbp1Q8R370 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ushbp1Q8R370 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ushbp1Q8R370 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ushbp1Q8R370 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ushbp1Q8R370 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ushbp1Q8R370 AC154454.1-201ENSMUST00000225253 216 ntBASIC25.15■■□□□ 1.62
Ushbp1Q8R370 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ushbp1Q8R370 Gm13889-201ENSMUST00000099689 1386 ntBASIC25.15■■□□□ 1.62
Ushbp1Q8R370 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ushbp1Q8R370 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Gm27502-201ENSMUST00000183495 199 ntBASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Mir3960-201ENSMUST00000198213 73 ntBASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ushbp1Q8R370 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ushbp1Q8R370 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ushbp1Q8R370 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ushbp1Q8R370 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
Ushbp1Q8R370 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Ushbp1Q8R370 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
Ushbp1Q8R370 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ushbp1Q8R370 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC25.11■■□□□ 1.61
Ushbp1Q8R370 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ushbp1Q8R370 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.11■■□□□ 1.61
Ushbp1Q8R370 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Gm7332-201ENSMUST00000118351 454 ntBASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Gm45364-201ENSMUST00000210883 159 ntBASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Ushbp1Q8R370 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ushbp1Q8R370 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ushbp1Q8R370 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.09■■□□□ 1.61
Ushbp1Q8R370 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC25.08■■□□□ 1.61
Ushbp1Q8R370 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ushbp1Q8R370 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ushbp1Q8R370 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
Ushbp1Q8R370 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Ushbp1Q8R370 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ushbp1Q8R370 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ushbp1Q8R370 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ushbp1Q8R370 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Ushbp1Q8R370 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ushbp1Q8R370 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ushbp1Q8R370 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
Ushbp1Q8R370 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Ushbp1Q8R370 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Ushbp1Q8R370 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Ushbp1Q8R370 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ushbp1Q8R370 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Ushbp1Q8R370 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ushbp1Q8R370 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Ushbp1Q8R370 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
Ushbp1Q8R370 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Ushbp1Q8R370 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Ushbp1Q8R370 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Ushbp1Q8R370 Gm9812-201ENSMUST00000061934 968 ntBASIC25.02■■□□□ 1.6
Ushbp1Q8R370 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 92.5 ms