Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ShhQ62226 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ShhQ62226 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ShhQ62226 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ShhQ62226 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
ShhQ62226 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ShhQ62226 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ShhQ62226 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.81■□□□□ 0.92
ShhQ62226 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ShhQ62226 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
ShhQ62226 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.8■□□□□ 0.92
ShhQ62226 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
ShhQ62226 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ShhQ62226 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ShhQ62226 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.8■□□□□ 0.92
ShhQ62226 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ShhQ62226 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ShhQ62226 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ShhQ62226 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ShhQ62226 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ShhQ62226 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ShhQ62226 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ShhQ62226 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Gm10420-201ENSMUST00000121713 882 ntBASIC20.78■□□□□ 0.92
ShhQ62226 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ShhQ62226 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ShhQ62226 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ShhQ62226 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ShhQ62226 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ShhQ62226 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ShhQ62226 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ShhQ62226 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ShhQ62226 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ShhQ62226 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ShhQ62226 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.76■□□□□ 0.91
ShhQ62226 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ShhQ62226 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.76■□□□□ 0.91
ShhQ62226 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ShhQ62226 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.74■□□□□ 0.91
ShhQ62226 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ShhQ62226 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ShhQ62226 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.73■□□□□ 0.91
ShhQ62226 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ShhQ62226 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ShhQ62226 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
ShhQ62226 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ShhQ62226 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ShhQ62226 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ShhQ62226 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ShhQ62226 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
ShhQ62226 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ShhQ62226 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
ShhQ62226 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ShhQ62226 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.71■□□□□ 0.91
ShhQ62226 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.71■□□□□ 0.91
ShhQ62226 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ShhQ62226 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.71■□□□□ 0.91
ShhQ62226 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ShhQ62226 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.7■□□□□ 0.9
ShhQ62226 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
ShhQ62226 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ShhQ62226 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.7■□□□□ 0.9
ShhQ62226 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ShhQ62226 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.69■□□□□ 0.9
ShhQ62226 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.69■□□□□ 0.9
ShhQ62226 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.69■□□□□ 0.9
ShhQ62226 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.68■□□□□ 0.9
ShhQ62226 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.68■□□□□ 0.9
ShhQ62226 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.68■□□□□ 0.9
ShhQ62226 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ShhQ62226 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ShhQ62226 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ShhQ62226 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
ShhQ62226 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ShhQ62226 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ShhQ62226 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ShhQ62226 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ShhQ62226 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ShhQ62226 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 119.6 ms