Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Nr1h4Q60641 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1h4Q60641 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1h4Q60641 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
Nr1h4Q60641 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nr1h4Q60641 Gm37136-201ENSMUST00000194368 194 ntBASIC21.33■■□□□ 1.01
Nr1h4Q60641 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nr1h4Q60641 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Nr1h4Q60641 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.33■■□□□ 1
Nr1h4Q60641 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.33■■□□□ 1
Nr1h4Q60641 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Nr1h4Q60641 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Nr1h4Q60641 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.32■■□□□ 1
Nr1h4Q60641 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1h4Q60641 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1h4Q60641 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1h4Q60641 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Nr1h4Q60641 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nr1h4Q60641 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Nr1h4Q60641 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC21.29■■□□□ 1
Nr1h4Q60641 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1h4Q60641 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.29■■□□□ 1
Nr1h4Q60641 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Nr1h4Q60641 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.29■■□□□ 1
Nr1h4Q60641 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1h4Q60641 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.29■■□□□ 1
Nr1h4Q60641 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Nr1h4Q60641 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Nr1h4Q60641 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nr1h4Q60641 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.28■■□□□ 1
Nr1h4Q60641 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Nr1h4Q60641 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.27■■□□□ 1
Nr1h4Q60641 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1h4Q60641 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1h4Q60641 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1h4Q60641 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Nr1h4Q60641 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1h4Q60641 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1h4Q60641 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.25■□□□□ 0.99
Nr1h4Q60641 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1h4Q60641 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1h4Q60641 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1h4Q60641 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Nr1h4Q60641 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1h4Q60641 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Nr1h4Q60641 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nr1h4Q60641 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h4Q60641 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1h4Q60641 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.22■□□□□ 0.99
Nr1h4Q60641 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Nr1h4Q60641 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Nr1h4Q60641 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.22■□□□□ 0.99
Nr1h4Q60641 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Nr1h4Q60641 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.21■□□□□ 0.99
Nr1h4Q60641 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h4Q60641 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h4Q60641 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h4Q60641 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h4Q60641 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Nr1h4Q60641 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h4Q60641 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h4Q60641 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.19■□□□□ 0.98
Nr1h4Q60641 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.19■□□□□ 0.98
Nr1h4Q60641 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.19■□□□□ 0.98
Nr1h4Q60641 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.19■□□□□ 0.98
Nr1h4Q60641 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h4Q60641 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Nr1h4Q60641 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h4Q60641 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h4Q60641 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h4Q60641 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1h4Q60641 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1h4Q60641 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h4Q60641 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h4Q60641 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.15■□□□□ 0.98
Nr1h4Q60641 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h4Q60641 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h4Q60641 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nr1h4Q60641 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nr1h4Q60641 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nr1h4Q60641 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1h4Q60641 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1h4Q60641 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1h4Q60641 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Nr1h4Q60641 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 70.8 ms