Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lire1P11260 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lire1P11260 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.96■□□□□ 0.95
Lire1P11260 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lire1P11260 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lire1P11260 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lire1P11260 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Lire1P11260 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.94■□□□□ 0.94
Lire1P11260 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
Lire1P11260 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lire1P11260 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Lire1P11260 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lire1P11260 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
Lire1P11260 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.92■□□□□ 0.94
Lire1P11260 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lire1P11260 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Lire1P11260 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.91■□□□□ 0.94
Lire1P11260 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.91■□□□□ 0.94
Lire1P11260 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lire1P11260 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Lire1P11260 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lire1P11260 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lire1P11260 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Lire1P11260 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Lire1P11260 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lire1P11260 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lire1P11260 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lire1P11260 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lire1P11260 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Lire1P11260 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.9■□□□□ 0.94
Lire1P11260 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lire1P11260 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Lire1P11260 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Lire1P11260 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Lire1P11260 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lire1P11260 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Lire1P11260 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Lire1P11260 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
Lire1P11260 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Lire1P11260 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lire1P11260 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lire1P11260 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Lire1P11260 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lire1P11260 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Lire1P11260 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.85■□□□□ 0.93
Lire1P11260 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lire1P11260 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lire1P11260 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.85■□□□□ 0.93
Lire1P11260 Gm30023-201ENSMUST00000197970 889 ntBASIC20.85■□□□□ 0.93
Lire1P11260 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Lire1P11260 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.84■□□□□ 0.93
Lire1P11260 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Lire1P11260 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Lire1P11260 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Lire1P11260 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Lire1P11260 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.83■□□□□ 0.93
Lire1P11260 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Lire1P11260 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Lire1P11260 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Lire1P11260 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lire1P11260 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.81■□□□□ 0.92
Lire1P11260 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lire1P11260 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Lire1P11260 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Lire1P11260 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lire1P11260 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Lire1P11260 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lire1P11260 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lire1P11260 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lire1P11260 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lire1P11260 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Lire1P11260 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Lire1P11260 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.79■□□□□ 0.92
Lire1P11260 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.79■□□□□ 0.92
Lire1P11260 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Lire1P11260 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Lire1P11260 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Lire1P11260 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Lire1P11260 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lire1P11260 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lire1P11260 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Lire1P11260 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lire1P11260 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lire1P11260 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lire1P11260 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms