Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gm13889-201ENSMUST00000099689 1386 ntBASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gm6311-201ENSMUST00000073790 878 ntBASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Gm5987-201ENSMUST00000196433 1151 ntBASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 AC154454.1-201ENSMUST00000225253 216 ntBASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv17A0A140T8P8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv17A0A140T8P8 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Pkd1-207ENSMUST00000228550 1050 ntBASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm45364-201ENSMUST00000210883 159 ntBASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm12818-201ENSMUST00000117562 1349 ntBASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm9812-201ENSMUST00000061934 968 ntBASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trbv17A0A140T8P8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trbv17A0A140T8P8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms