Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
LIG3P49916 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.06■□□□□ 0.64
LIG3P49916 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
LIG3P49916 TEX21P-204ENST00000641479 1693 ntBASIC19.06■□□□□ 0.64
LIG3P49916 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 AC005521.1-201ENST00000393351 872 ntBASIC19.06■□□□□ 0.64
LIG3P49916 AC113347.1-201ENST00000413321 391 ntBASIC19.06■□□□□ 0.64
LIG3P49916 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
LIG3P49916 CA15P1-201ENST00000481698 905 ntBASIC19.06■□□□□ 0.64
LIG3P49916 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.06■□□□□ 0.64
LIG3P49916 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.06■□□□□ 0.64
LIG3P49916 FAM87A-204ENST00000613235 858 ntBASIC19.06■□□□□ 0.64
LIG3P49916 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
LIG3P49916 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 PKD1P1-201ENST00000458669 6805 ntBASIC19.06■□□□□ 0.64
LIG3P49916 AC141586.3-201ENST00000562166 1838 ntBASIC19.06■□□□□ 0.64
LIG3P49916 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.06■□□□□ 0.64
LIG3P49916 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LIG3P49916 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIG3P49916 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 AL137013.1-201ENST00000432946 1228 ntBASIC19.05■□□□□ 0.64
LIG3P49916 AC007663.1-201ENST00000438948 1240 ntBASIC19.05■□□□□ 0.64
LIG3P49916 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.05■□□□□ 0.64
LIG3P49916 TSPY17P-201ENST00000450329 467 ntBASIC19.05■□□□□ 0.64
LIG3P49916 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LIG3P49916 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 AC092338.2-201ENST00000568827 1415 ntBASIC19.05■□□□□ 0.64
LIG3P49916 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.05■□□□□ 0.64
LIG3P49916 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG3P49916 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 AL391005.1-201ENST00000623953 2435 ntBASIC19.04■□□□□ 0.64
LIG3P49916 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 GNAS-203ENST00000306120 1878 ntBASIC19.04■□□□□ 0.64
LIG3P49916 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 TERF1P1-201ENST00000311003 1181 ntBASIC19.04■□□□□ 0.64
LIG3P49916 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIG3P49916 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIG3P49916 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG3P49916 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.03■□□□□ 0.64
LIG3P49916 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms